Welcome to EhuBio

Welcome to the EhuBio home page.

We present free software projects related to bioinformatics and developed in collaboration between the Department of Communications Engineering, the Department of Genetics, Physical Anthropology and Animal Physiology, and the Department of Biochemistry and Molecular Biology of the University of the Basque Country (UPV/EHU).

EhuBio Bioinformatics Projects

Name	Description
Wregex	A software tool for aminoacid motif searching termed Wregex (weighted regular expression). Our novel approach combines regular expressions with a Position-Specific Scoring Matrix (PSSM).
PAnalyzer	A software tool focused on the protein inference process of shotgun proteomics. Our approach considers all the identified proteins and groups them when necessary indicating their confidence using different evidence categories. PAnalyzer can read protein identification files in the XML output format of the ProteinLynx Global Server (PLGS) software provided by Waters Corporation for their MSE data, and also in the mzIdentML format recently standardized by HUPO-PSI.
MyMRM	MyMRM is a simple software tool to aid proteomic laboratories designing targeted proteomics methods for their own equipment by using the data of their shotgun experiments.
spHPP	Contributions to the Spanish bioinformatics group of the Chromosome-centric Human Proteome Project (C-HPP).

Funding: The maintenance of this website is supported by the Basque Country Government Department of Industry (SAIOTEK S-PE12UN005) and the University of the Basque Country (UFI11/20).

For further information please contact info@ehubio.es.