Publications

2024

2024

Enhancing prediction of short linear protein motifs with Wregex 3.0
Computational and Structural Biotechnology Journal
2024-07
 
Performance of LPGF Protein Validation in diverse sample types and mass spectrometry workflows
72nd American Society for Mass Spectrometry (ASMS) Annual Conference
2024-06-05

2022

2022

Identification of substrates for human deubiquitinating enzymes (DUBs): An up-to-date review and a case study for neurodevelopmental disorders
Seminars in Cell & Developmental Biology
2022-01-15

2021

2021

Konpartimentu-espezifikoko gertuko biotinilazioa: XPO1en esportazio-kargoak identifikatzeko hurbilketa berria
EKAIA Euskal Herriko Unibertsitateko Zientzia eta Teknologia Aldizkaria
2021-06-03
 
A Proteomic Approach for Systematic Mapping of Substrates of Human Deubiquitinating Enzymes
International Journal of Molecular Sciences
2021-05-03

2020

2020

Using a Simple Cellular Assay to Map NES Motifs in Cancer-Related Proteins, Gain Insight into CRM1-Mediated NES Export, and Search for NES-Harboring Micropeptides
International Journal of Molecular Sciences
2020-09-01
 
Protein Probability Model for High-Throughput Protein Identification by Mass Spectrometry-Based Proteomics
Journal of Proteome Research
2020-03-06
 
Calculation of False Discovery Rate for Peptide and Protein Identification
Mass Spectrometry Data Analysis in Proteomics
2020
 
Comparing Peptide Spectra Matches Across Search Engines
Mass Spectrometry Data Analysis in Proteomics
2020

2019

2019

Altered Nuclear Export Signal Recognition as a Driver of Oncogenesis.
Cancer discovery
2019-07-08

2018

2018

PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets
Journal of Proteome Research
2018-04

2017

2017

Enhanced Missing Proteins Detection in NCI60 Cell Lines Using an Integrative Search Engine Approach
Journal of Proteome Research
2017-12

2016

2016

Proteome-wide search for functional motifs altered in tumors: Prediction of nuclear export signals inactivated by cancer-related mutations
Sci. Rep. / Scientific Reports
2016-05

2015

2015

Proteogenomics Dashboard for the Human Proteome Project
J. Proteome Res. / Journal of Proteome Research
2015-09

2014

2014

A standardized framing for reporting protein identifications in mzIdentML 1.2
Proteomics / PROTEOMICS
2014-09
 
Prediction of nuclear export signals using weighted regular expressions (Wregex)
Bioinformatics
2014-01
 
Surfing Transcriptomic Landscapes. A Step beyond the Annotation of Chromosome 16 Proteome
J. Proteome Res. / Journal of Proteome Research
2014-01

2012

2012

SIR: Deterministic protein inference from peptides assigned to MS data
Journal of Proteomics
2012-07
 
PAnalyzer: A software tool for protein inference in shotgun proteomics
BMC Bioinformatics
2012