Enhancing prediction of short linear protein motifs with Wregex 3.0
Computational and Structural Biotechnology Journal
2024-12
Performance of LPGF Protein Validation in diverse sample types and mass spectrometry workflows
72nd American Society for Mass Spectrometry (ASMS) Annual Conference
2024-06-05
2022
2022
Identification of substrates for human deubiquitinating enzymes (DUBs): An up-to-date review and a case study for neurodevelopmental disorders
Seminars in Cell & Developmental Biology
2022-01-15
2021
2021
Konpartimentu-espezifikoko gertuko biotinilazioa: XPO1en esportazio-kargoak identifikatzeko hurbilketa berria
EKAIA Euskal Herriko Unibertsitateko Zientzia eta Teknologia Aldizkaria
2021-06-03
A Proteomic Approach for Systematic Mapping of Substrates of Human Deubiquitinating Enzymes
International Journal of Molecular Sciences
2021-05-03
2020
2020
Using a Simple Cellular Assay to Map NES Motifs in Cancer-Related Proteins, Gain Insight into CRM1-Mediated NES Export, and Search for NES-Harboring Micropeptides
International Journal of Molecular Sciences
2020-09-01
Protein Probability Model for High-Throughput Protein Identification by Mass Spectrometry-Based Proteomics
Journal of Proteome Research
2020-03-06
Calculation of False Discovery Rate for Peptide and Protein Identification
Mass Spectrometry Data Analysis in Proteomics
2020
Comparing Peptide Spectra Matches Across Search Engines
Mass Spectrometry Data Analysis in Proteomics
2020
2019
2019
Altered Nuclear Export Signal Recognition as a Driver of Oncogenesis.
Cancer discovery
2019-07-08
2018
2018
PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets
Journal of Proteome Research
2018-04
2017
2017
Enhanced Missing Proteins Detection in NCI60 Cell Lines Using an Integrative Search Engine Approach
Journal of Proteome Research
2017-12
2016
2016
Proteome-wide search for functional motifs altered in tumors: Prediction of nuclear export signals inactivated by cancer-related mutations
Sci. Rep. / Scientific Reports
2016-05
2015
2015
Proteogenomics Dashboard for the Human Proteome Project
J. Proteome Res. / Journal of Proteome Research
2015-09
2014
2014
A standardized framing for reporting protein identifications in mzIdentML 1.2
Proteomics / PROTEOMICS
2014-09
Prediction of nuclear export signals using weighted regular expressions (Wregex)
Bioinformatics
2014-01
Surfing Transcriptomic Landscapes. A Step beyond the Annotation of Chromosome 16 Proteome
J. Proteome Res. / Journal of Proteome Research
2014-01
2012
2012
SIR: Deterministic protein inference from peptides assigned to MS data
Journal of Proteomics
2012-07
PAnalyzer: A software tool for protein inference in shotgun proteomics